PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476336
Common NameARALYDRAFT_476336
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 393aa    MW: 44549.9 Da    PI: 7.7737
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476336genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0012042123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y C++Cg s s k++ ++Hi++H
   476336 20 YLCQYCGISRSKKYLITSHIQSH 42
             56********************6 PP

2zf-C2H220.21.6e-066688123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C+ Cg  F+ + +Lk+H+++H
   476336 66 HTCQECGAEFKKPAHLKQHMQSH 88
             79*******************99 PP

3zf-C2H216.13.2e-0594118123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              + C   dC +s++rk++L+rH+ tH
   476336  94 FACYvdDCATSYRRKDHLNRHLLTH 118
              668888*****************99 PP

4zf-C2H222.33.5e-07196219223
              EET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
              +C+   Cgk F+ +s+L++H+ +H
   476336 196 VCKeiGCGKAFKYPSQLQKHQDSH 219
              79999****************998 PP

5zf-C2H217.98.5e-06285310123
              EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
              +kC+   C+ +Fs  snL++H +  H
   476336 285 FKCEveGCSSTFSKASNLQKHVKAvH 310
              89*******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355182042IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-56585IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.0046693IPR007087Zinc finger, C2H2
SMARTSM003550.00156688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-1079120No hitNo description
Gene3DG3DSA:3.30.160.609.1E-1386120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.88994123IPR007087Zinc finger, C2H2
SMARTSM003550.3494118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307123153IPR007087Zinc finger, C2H2
SMARTSM003550.3123148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-5190221No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6190219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.72195224IPR007087Zinc finger, C2H2
SMARTSM003550.0028195219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197219IPR007087Zinc finger, C2H2
SMARTSM003550.97227252IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-4229250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280229252IPR007087Zinc finger, C2H2
SMARTSM0035522255276IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.35E-8266320No hitNo description
PROSITE profilePS5015712.965285315IPR007087Zinc finger, C2H2
SMARTSM003554.8E-4285310IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-8285310IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280287310IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-5311336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1316342IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280318342IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAEEAKKDVK TSAKKDIRNY LCQYCGISRS KKYLITSHIQ SHHQMELEEE RDDEDCEVEE  60
EFSSKHTCQE CGAEFKKPAH LKQHMQSHSL ERPFACYVDD CATSYRRKDH LNRHLLTHKG  120
KLFKCPKENC KSEFSVQGNV SRHVKKCHSS GDSDKDTTGK GDSDKENAGN GDSGKDNTGN  180
GDSQPSECST GQKKLVCKEI GCGKAFKYPS QLQKHQDSHV KLDSVEAFCS EPGCMKYFTN  240
EECLKAHIRS CHQHINCEIC GSKHLKKNIK RHLRTHDEDS SPGEFKCEVE GCSSTFSKAS  300
NLQKHVKAVH EDLRPFVCGF PGCGMRFAYK HVRNNHENSG CHVYTCGDFV ETDEDFTSRP  360
RGGLKRKQVT AEMLVRKRVM PPRFDSEEHE TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A3e-111973364154PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304780.0AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D.
GenBankAY0542250.0AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY0660420.0AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY1866100.0AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887409.10.0hypothetical protein ARALYDRAFT_476336
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLD7KZ910.0D7KZ91_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.2__1466__AT1G72050.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA